Browse of TCMCG007C31612 protein

CDS

Accession Number	TCMCG007C31612
gbkey	CDS
Protein Id	XP_033146984.1
Location	complement(join(9624769..9625349,9625444..9625809,9625966..9627043,9627150..9627448,9627592..9627670,9627774..9627861,9628022..9628124,9628265..9628442,9628583..9629923,9630138..9630286,9630362..9630410,9630485..9630719,9630965..9631024,9631242..9631568,9631653..9631731,9632146..9632225,9632321..9632398,9632600..9632677,9632767..9632854,9632948..9633034,9633126..9633265,9633359..9633435,9633588..9633611))
Gene	LOC103829787
GeneID	103829787
Organism	Brassica rapa

Protein

Length	1887aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA249065
db_source	XM_033291093.1
Definition	mediator of RNA polymerase II transcription subunit 13 isoform X2 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category	K
Description	Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K15164        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko04919        [VIEW IN KEGG] map04919        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0005215        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0006810        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008643        [VIEW IN EMBL-EBI] GO:0015144        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016021        [VIEW IN EMBL-EBI] GO:0022857        [VIEW IN EMBL-EBI] GO:0031224        [VIEW IN EMBL-EBI] GO:0034219        [VIEW IN EMBL-EBI] GO:0040034        [VIEW IN EMBL-EBI] GO:0044425        [VIEW IN EMBL-EBI] GO:0050789        [VIEW IN EMBL-EBI] GO:0050793        [VIEW IN EMBL-EBI] GO:0051119        [VIEW IN EMBL-EBI] GO:0051179        [VIEW IN EMBL-EBI] GO:0051234        [VIEW IN EMBL-EBI] GO:0051239        [VIEW IN EMBL-EBI] GO:0055085        [VIEW IN EMBL-EBI] GO:0065007        [VIEW IN EMBL-EBI] GO:0071702        [VIEW IN EMBL-EBI] GO:0090213        [VIEW IN EMBL-EBI] GO:2000026        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGTGGACTAATGTTTTCAGAATTGGAGGTCTCCATAATGTTTCTTGGTTTCAGTTTCTTCCTAGTGAAGCTGAGCTGAGTCCTGCCTCTGATACAACAAGTTCAAGAGCAGAGCAGAATGATGCTGCAACCTATCTTGTGCTTTCATCTCATCTTCGGCTTCAGAAGGAAGGCTTTCTTACCACATGGACCAATTCTTTTGTTGGACCTTGGGATCCTTCTCAAGGCTTATACAACCCTGATGAAAAGATCAAGCTTTGGCTTTTTCTTCCTGGGCGTCATTCATCAATCGCTGATAAAGCTCAGGCTGCAGTCTCAAAACTTAGAGTTGTTGCTTCTGGAATTTGGGTAGCACCTGGGGACTCTGAAGAGATATCAGTTGCCTTTTCACAGTCTTTACGTAATTGCATTGAAAGAGCATTAAGTGGACTTTCCTACATGAGATTTGGAGATGTTTTTTCAAAATTCAGCCCTCAAAGTGAAGATTATTTGAGGAGGGGACAGCCTACTGTTGAGTTCATCTTTGCTGCTACCGAGGAGGCAGTTTTTGTCCATGTCATTGTATCTGCCAAGAATGTCCGGGCACTTTCAAGTGGCGATGCTGAGAGACTGTTAAGGAGTTCTTTGAAAAACTCCAGTTATAGGCTTCCCGTGATTGTTTCTCCTCATGGTATGCGGGGCAGCCTCACTGGATTCTGTCCCAATGACCTTGTCAAGCAAGTCTACTTCAGTTCTGGAAACATAGGGACTTCGAGTGGATATATTGGTCTCCCTTCTCATGTTGGTCGTGGGTCCCGTCTGATAAATGACAATCATTGTTACGTGGAAGTTACACTTGGTTGCTGCCAAAGTATTAATGACAACGCAAGTCAAACTAATTCGACCTTTGCGGTAAACTTGCCCCATAATCAGCGTCCTGAACCATCAGTTGGGAGTAGAGATCACCGGAAAGGACAACAAGATATCTCATCCGTGCGTGAAAAAAAGTTCATATATCCAGCTGAGGCAGTGCTTGTGCCAATCTTGCAGTCGGCATTTGCTAAATTTTCTTTGAAAAGATTTTGGCTTCAAAACTGGATAGGACCATCACTGACAGGCTCATCGTTATCTATGCACTGGGCTGGTGATTTTGAATTCCTTGGATCGTCTGGAAATAAGAGTGATGGGTTTTATGAAAAAAATGGTTATAACAGCAGCGGCAGTAGCCGTAATAGCAGCATTAGTTCTACAAGTAGTGCTTCTAGCGGGAGTGGTTGGAGAATGGCTTCAAGAACTGGTGACCTTGATGCTGATGCAGATTCGTTGACGTGTAGGCAATCTGGTCTAACTTGTAATGATGATCGCCCAAAATCGGGTTCTAAGCGGTCGCGAACAGGGAGGACAGAGTCTTTCGGTCAAGTAGGCATTACAGATGATCAAATTGGCTGGGATTGGGATGATGATGACGATGATGATGATGATAGAGGAGTTGGTATGGATATCAAGGCACTTCTTTCAGAGTTTGGAGACTTTGGTGACTTCTTTGAGAACGATGCATTGCCTTTTGGGGAGCCACCGGGAACAGCAGAGTCGCATACGCTAATGATTCCTCCAGATTCTGCTGAAATAGGTTGCAGTCCAGTTGATATGATGGATGTATCAGATCAGATTGTTTTGCCCGATGGGTTTTCCTCTTTTGAGAGCTTTAATCCTGTTCCCCCGATCATAGATGAGTGCCTTATCAAAAGTCAAGAAGTCATCAACAGCAGTGTCACTTCAGCAACTTCAAATCAGATGTCAAGCTCTTCTACTGGTGAGTTCGATCATTTGATAAAAGCAGAAGCTATGATGACTTTTGCTCCTGAGTATGGAGCTGTTGAAGTACCTATGAGCGAGATTTCCTCTTTCAAAAGCCCATATCTTCCCAAATCTCATAAAGTGGAGAGTTCACATTCAAGAACGAGTAACTATGTTTATGGACCCACACCACCGGCCACTGATTCTGATGGAGCAGCCGACAAGAATTTACTTGGATCAAAAGCCTGCATTGGTAACAATGATGGCAGAACTTTGTTTCAGTCGAGAGATTATTACACTCAAGTGGAAGGCAGAAAGGACCAACATAAGATGCTACCTACTGTAATTAGTGACAACAGTAGTACAAAGGAGGGTGTTTCTCAATTAAAATATTCAAACTTCAGTGCTGTTAAAACCATACAGGGGAAAAAGTCTGACGGTATATCTGCTGTTGTTAGTACTTTATTATCTTCAAAGACCTTGTTGGCAACAGACGTGGGAAGCGTTATGTTCCAAGCTTTCATGTCTAGGATGCGGCACATAATCATTTCTTCGAAGCACAGTTCACCATTTAGTCTGACAAGGCTTAGTGGAAAGCTATTTCTGAACCAGCTGTCAAATGAGCCCAGTAGTCTGACAGACAACATATCTGCAAGGAACGAGATATATAAGAAAGAAATACCTACTAGAATAGCTGGAGGTTTCGACGGAGGAATGATAGACAGCCACATGAGTGCACCAGTTGGCGTGTGGCGGACTGTTTCAGTCCCAAAAACAGCAAAACCTGCTAGTTCGCCAAATATTGAAGCAGGCTCATCCTTGCCCCATAGTTCATTTAGCGAAGACAGCTTGCTTTCTTATGGCCAAAGACAGCCATTGCAGGAACTCCTAGATGGAGTAGCGCTACTTGTACAGCAAGCTACTTCTTTTGTTGATTTAGCTCTGGATTCAGATTGTGGAGATGGTCCTTATGGCTGGCTTGCGCTGGAAGAGTTATGGAGACGGGAACTTTCGTGTGGGCCCTCTGCTGGCCATGCAGGTTGTGGGGGAACTTTGGCTTCCTGCCATTCTCTGGACATTGCTGGTGTCAAGCTAGTTGACCCACTCTCTGCTGAGGTTTTTCCTTCGTCTGTCATTACTCTGCTGCAATCTGACATCAAAACAGCTCTGAAATCTGCATTTGGTCAGTCAGATGGTCCATTATCTGTCACAGATTGGTGCAAGGGCCGGAATCACGCAATGGATGGGGGATCTATTTCTGAGGGATCTACTGCTGAGTCATCCCTCCGTGAAGATAGTGGGAAACGAGAGGAGACTGCTCAGAGCCAAGACATATACAGTTCAGAATTACTCCGACCGACACTTTTTGTTCTTCCGTCACCTTCTATACTTGTCGGGTACCAAGATGACTGGCTTAAGATATCAACTAACGCCTTGCCACATTGGGAAAAGGCCCCTTTCGAGCCATATGCTCTGCCCAAAAATATGAGCTATACTGTTGTATGCCCGGATATAGATCCTTTAACCAGTGCTGCCACTGATTTCTTCCAACAACTTGGAACTGTTTATGAGACGTGCAGACTGGGAACCCATTTGCCACATATTCTGGGAAATCAAATGGAAACTGACGCTGGAAGATTATCCTCATCTGGATTTGTTCTGCTTGATTGCCCTCAGTCGATGAAGATTGAAAGCAATAACACATCGCTTCTGGGATCTCTCAGCGATTATTTTCTGTCTTTGTCGAATGGGTGGAATGTGACTAGCTATCTGAAGTCTTTATCAAAAGCGCTGAAAGGTCTAAAGCTTGAGTCTTGCCTTTACACAAACCAGAAAGAAGGATCAGCTACGAGTCCTTGCATCGTAGTGTACATAGTGTGTCCATTTCCCGACCCTTCGGCAGTTTTAAGGACGATCGTCCAATCGTCTATTGCACTTGGATCAGGAATACAGCCAGATAAAGACAGGAGATCGTTACTTAACAGTCAGGTTGCAAGGGCGTTTGCTAGTTCTGCTGCTGTAGACGAAGCATCAATATCTCATATTCCAGTGCTTTCGGGGTTTAGTGTCCCCAAACTAGTTCTACAGGTGGTGTCTGTTGATTCTATTTTCCGGATAACAAGTCCGAGCTTTAATGAGCTTGTCATTCTCAAGGATACTGCCTTTTCTGTATACAATAAGGCTCGTAAAATCTCACGAGGAATGCCTAATGATGCATTTCAGTCGTCCTCTTTATCAAGCAGATCGTCTTCAGCCTTGACACCAATGAGCTCTATTTCAGGAAGCTGGAAAGACTGTGTTGGTTCTCGAATGACAGGTTCTACACATCCAAGAGATGGTGAAAGGGATAGTAGCATGAGAACGAGTTGGGATAGCTGGCAAATGACAAGATCTGGAGGATTAAGCTGCGACCCAAACAGAAATGAAGATTTTTACCTTAATGATGAAAGTTTTTATTTATTTGAACCGCTTTTCATTCTTTCCGAGCCTGGTTCAGTGGAGCGTGGAGTTTCACCTACTTTTGGCGGCTTAGGTTCAGAGTCTTCAAAGCCAGTACCTGAGGATGGTGGCAGAGGTTCTGGACTTGGCGTCAATGCAATGGAAGGCATACCATCAGGATCAAGCTCACAGGGGGATGCATCCCAGGTTGAAGGAAAGAATATTCCAAGTTTACATTGCTGCTACGGTTGGACAGAGGACTGGCGATGGCTTGTAAGCATCTGGACAGATGCCAGGGGTGAACTGCTTGACACACATATATTTCCCTTTGGTGGAATTAGCAGTAGACAGGATACGAAAGGGCTGCAGTGTCTTTTTGTTCAAGTTCTGCAGCAAGGATGTCAAATCCTACAGGCATGTTCCTCCCCTGACAATGGATCTTCAAAACCCAGAGACTTTGTCATTACACGCATTGGCAATTTCTTTGAGCTTGAATACCTAGAGTGGCAAAAGGCAATATACTCAGCTGGAGGTCCTGACATTAAAAAGTGGCCTATTCAACTTCGACGTTCTGCGCCTTCTGGCATAGCCACCAATAGCAGCGTATCTTCCTTGCAACCGCCGGATATGAGTTTGATTCAAGAGAGAGCCTCGTCAAGTAGCACACTCTACAGCTCTCACTCAAAACCATCCAACTTCGTGAAAGGCAGTATGGGGCAATCTGCTGGAAGAAAGCAGATAATGGGTGGACAAACCATTTCTGGTACTCCAAGGGGTTTGTTTCAGTGGGTTCACAGCATTAGTTTTACTTCTATTTCACTTGATCAATCTCTGCATCTTGTTCTTCCGGCTGAGTTGGTATCTCCAGGAGGTACTGGTATGAGTTCATCAAATTACATTGAAGGTTTCACTCCTGTCAAATCTCTTGGGTCAACGGCTTACTCGTACATGATGATACCATCACCCAACATGCGCTTTCTTCACCCAAGTCCTCTTCAGCTTCCTACATGTTTAACTGCCGAATCACCTCCGCTTGCTCACCTTCTTCACAGCAAAGGCTGTGCAATACCCTTGTCTACCGGGTTTGTTGTTTCAAAAGCTGTGCCTTCCATGAGAAAAGACTCTAGAATAAATATGAAAGAAGAATGGCCATCAGTTCTCTCTGTTAGTCTCATTGACTACTATGGTGGTTATGACAACGCTCATGACAAAATTCTTCATGGAATCATGAAGCAAAGCGGTGGAGGGACCCAAGAAACTAGAGATTTTGAGGTTGAAAGCCATCTTATCCTTGAGTCAATTGCGGCAGAACTCCACGCTCTATCATGGATGACTGTAAGTCCAGCATATCTGGATAGGCGGACGGCATTGCCTTTTCACTGTGATAAGGTTCTCAGACTGAGACGTCTTCTTCATTTTGCGGATAAAGAACTCCAGACTACCAGATAA

Protein:   MWTNVFRIGGLHNVSWFQFLPSEAELSPASDTTSSRAEQNDAATYLVLSSHLRLQKEGFLTTWTNSFVGPWDPSQGLYNPDEKIKLWLFLPGRHSSIADKAQAAVSKLRVVASGIWVAPGDSEEISVAFSQSLRNCIERALSGLSYMRFGDVFSKFSPQSEDYLRRGQPTVEFIFAATEEAVFVHVIVSAKNVRALSSGDAERLLRSSLKNSSYRLPVIVSPHGMRGSLTGFCPNDLVKQVYFSSGNIGTSSGYIGLPSHVGRGSRLINDNHCYVEVTLGCCQSINDNASQTNSTFAVNLPHNQRPEPSVGSRDHRKGQQDISSVREKKFIYPAEAVLVPILQSAFAKFSLKRFWLQNWIGPSLTGSSLSMHWAGDFEFLGSSGNKSDGFYEKNGYNSSGSSRNSSISSTSSASSGSGWRMASRTGDLDADADSLTCRQSGLTCNDDRPKSGSKRSRTGRTESFGQVGITDDQIGWDWDDDDDDDDDRGVGMDIKALLSEFGDFGDFFENDALPFGEPPGTAESHTLMIPPDSAEIGCSPVDMMDVSDQIVLPDGFSSFESFNPVPPIIDECLIKSQEVINSSVTSATSNQMSSSSTGEFDHLIKAEAMMTFAPEYGAVEVPMSEISSFKSPYLPKSHKVESSHSRTSNYVYGPTPPATDSDGAADKNLLGSKACIGNNDGRTLFQSRDYYTQVEGRKDQHKMLPTVISDNSSTKEGVSQLKYSNFSAVKTIQGKKSDGISAVVSTLLSSKTLLATDVGSVMFQAFMSRMRHIIISSKHSSPFSLTRLSGKLFLNQLSNEPSSLTDNISARNEIYKKEIPTRIAGGFDGGMIDSHMSAPVGVWRTVSVPKTAKPASSPNIEAGSSLPHSSFSEDSLLSYGQRQPLQELLDGVALLVQQATSFVDLALDSDCGDGPYGWLALEELWRRELSCGPSAGHAGCGGTLASCHSLDIAGVKLVDPLSAEVFPSSVITLLQSDIKTALKSAFGQSDGPLSVTDWCKGRNHAMDGGSISEGSTAESSLREDSGKREETAQSQDIYSSELLRPTLFVLPSPSILVGYQDDWLKISTNALPHWEKAPFEPYALPKNMSYTVVCPDIDPLTSAATDFFQQLGTVYETCRLGTHLPHILGNQMETDAGRLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVTSYLKSLSKALKGLKLESCLYTNQKEGSATSPCIVVYIVCPFPDPSAVLRTIVQSSIALGSGIQPDKDRRSLLNSQVARAFASSAAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVILKDTAFSVYNKARKISRGMPNDAFQSSSLSSRSSSALTPMSSISGSWKDCVGSRMTGSTHPRDGERDSSMRTSWDSWQMTRSGGLSCDPNRNEDFYLNDESFYLFEPLFILSEPGSVERGVSPTFGGLGSESSKPVPEDGGRGSGLGVNAMEGIPSGSSSQGDASQVEGKNIPSLHCCYGWTEDWRWLVSIWTDARGELLDTHIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDNGSSKPRDFVITRIGNFFELEYLEWQKAIYSAGGPDIKKWPIQLRRSAPSGIATNSSVSSLQPPDMSLIQERASSSSTLYSSHSKPSNFVKGSMGQSAGRKQIMGGQTISGTPRGLFQWVHSISFTSISLDQSLHLVLPAELVSPGGTGMSSSNYIEGFTPVKSLGSTAYSYMMIPSPNMRFLHPSPLQLPTCLTAESPPLAHLLHSKGCAIPLSTGFVVSKAVPSMRKDSRINMKEEWPSVLSVSLIDYYGGYDNAHDKILHGIMKQSGGGTQETRDFEVESHLILESIAAELHALSWMTVSPAYLDRRTALPFHCDKVLRLRRLLHFADKELQTTR